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Enzymatic Hydrolysis Tests
analysis

Background on Enzymatic Hydrolysis

Enzymes are biocatalysts and play a key role in biorefinery processes for the biochemical/biological conversion of biomass to biofuels and biobased products. First generation and second generation biofuels use enzymes for conversion of structural polymers to monomers so that these can then be fermented to the desired fuel by yeast or bacteria.

Starch Biorefinery Enzymes


Amylases are key enzymes in starch biorefineries. There are two main kinds of amylases that are widely used in industrial applications:

 
  • Alpha-amylase:

      These enzymes are also known as Taka Amylase-A. They are endo-enzymes and are responsible for the initial hydrolysis of starch granules to soluble products. They act in random fashion on alpha (1-4) linkages of amylose and amylopectin, but cannot cleave the branched alpha (1-6) linkages. These enzymes release linear short chain dextrans, oligosachharides, maltose and glucose.

  • Glucoamylase:

      This enzyme, also known as amyloglucosidase, is an exo-acting amylase that can hydrolyse both alpha (1-4) and alpha (1-6) linkages. It works on non-reducing endings of the polysaccharide and releases glucose units.

  • actions of amylases

    Lignocellulose Biorefinery Enzymes


    Plant biomass is a complex and recalcitrant matrix made of cellulose, hemicellulose and lignin. Lignocellulosic biomass typicaly needs a pre-treatment in order to make cellulose more accessible to enzymes.

    The common class of enzymes that are used in lignocellulosic biorefineries are cellulases and xylanases. Lignin-degrading enzymes are also considered important in the biological and biochemical pre-treatment of biomass in order to avoid the formation of inhibitors.

    Cellulase Enzymes


    Cellulases are produced from both bacteria and fungi. Fungal cellulases are a complex of the following individual enzymes: Endoglucanase, exoglucanase and betaglucosidase. Fungal enzymes are the most commonly used cellulases in the advanced biofuels and biorefining industries because of the ability of fungi to produce these enzymes in high titres. The individual enzymes of cellulase act synergistically to breakdown cellulose to glucose:

     
  • Endoglucanases:

      These enzymes break down the cellulose fibers and expose reducing and non-reducing ends for the action of exoglucanases.

  • Exoglucanases:

      These enzymes further break down the cellulose into the disaccharide cellobiose.

  • Betaglucosidases:

      These enzymes take the cellobiose formed by the action of exoglucanases and break it up into glucose monomers.

  • The products of enzymatic hydrolysis can lead to feedback inhibition on the enzymes. For example, cellobiose has strong inhibition on endo and exo cellulose, but its accumulation beyond a certain concentration is avoided by the action of beta-glucosidase. However, beta-glucosidase itself is feedback-inhibited by glucose and hence cellobiose can accumulate, inhibiting exocellulases and endocellulases. To overcome this, enzyme industries produce mixes of cellulases and individual components of enzymes. In many cases, cellulases are supplemented with excess beta-glucosidases in order to avoid feedback inhibition. Substrate-specific and application-specific enzyme cocktails are developed by supplementing cellulase mixes with individual cellulase components.

    actions of cellulases

    Xylanase Enzymes


    Hemicellulose is a complex branched structure with different sugars and acidic compounds substituted at various positions on a backbone chain. As a result of this, multiple different enzymes are required for the complete hydrolysis of hemicellulose. Xylanases are mixtures of endoxylanases, beta-xylosidases, arabinofuranosidases, galactosidases, acetyl xylan esterases, and alpha-glucuronidases. The mix of xylanolytic enzymes act in synergy to convert xylan polymers to their monomeric constituents.

    Endoxylanases reduce the viscosity of xylan by cleaving the xylan to soluble fragments and beta-xylosidases act on the soluble fragments and xylobiose to release xylose. Arabinofuranosidases and alpha-glucuronidases act on sugar and uronic-acid side groups of xylan.

    actions of xylanases

    Enzymatic Hydrolysis Tests at Celignis

    We are pleased to offer a variety of analysis packages for evaluating both the suitability of biomass for enzymatic digestion and the activities of selected enzymes.

    Evaluation of Biomass and Pre-Treated Biomass for Enzymatic Digestibility


    In analysis package P121 we add an enzyme solution to a sample and incubate it for 3 days, monitoring the sugars that are hydrolysed over time. Subsamples of the hydrolysate are collected after 0, 12, 24, 48, and 72 hours of digestion and are analysed for monosaccharides (glucose, xylose, mannose, arabinose, galactose, rhamnose) and cellobiose using our ion chromatography system. The resulting data allow us to plot a time-series of the concentrations of these sugars in solution and we also provide statistics for the conversion yield and conversion rate of cellulose and xylan.

    These enzymatic hydrolysis tests can be carried out on native biomass and on pre-treated samples and we can either use a commercial enzyme mix or you can supply your own enzymes.

    In order to carry out these tests we need to know the lignocellulosic composition of the sample so that we can use appropriate doses of enzymes and determine the conversion yields and rates. We recommend that analysis package P10 is used for determining this composition.

    P121   Evaluation of Biomass for Enzymatic Digestibility
    Total Sugars in Enzyme Hydrolysate, Glucose in Enzyme Hydrolysate, Xylose in Enzyme Hydrolysate, Arabinose in Enzyme Hydrolysate, Mannose in Enzyme Hydrolysate, Galactose in Enzyme Hydrolysate, Rhamnose in Enzyme Hydrolysate, Cellobiose in Enzyme Hydrolysate, Enzymatic Hydrolysis Kinetics, Cellulose Conversion Yield, Xylan Conversion Yield, Combined Sugar Yield, Cellulose Conversion Rate, Xylan Conversion Rate

    Further Details



    Evaluation of Pre-Treatment on Enzymatic Digestibility


    Lignocellulose is a recalcitrant feedstock, with cellulose protected by lignin and hemicellulose, so making it less accessible to enzymatic degradation and microbial attack.

    As a result, several pre-treatment strategies to increase the accessibility of cellulose and enhance the digestibility of lignocellulosic biomass by enzymes have been developed. An effective pre-treatment will result in increased accessibility of cellulose to enzymes and thus in high concentrations, yields and productivities of sugars in the enzymatic hydrolysate when compared to the un-treated biomass.

    At Celignis we can undertake the enzymatic hydrolysis of a pre-treated sample using analysis package P121 or we can undertake a more detailed study to evaluate the efficacy of pre-treatment. This study involves analysis package P121 being undertaken on the native (non-pretreated) sample with analysis package P122 used for the enzymatic hydrolysis of the pre-treated sample(s). This package allows for the generation of a number of additional statistics outlining the relative advantages of the pre-treated sample(s) as substrates for enzymatic hydrolysis compared with the original sample. These statistics include:

     
  • Increase in Cellulose Accessibility after Pre-Treatment:

       

  • Percent Increase in Cellulose Conversion Efficiency:

       

  • Percent Increase in Cellulose Conversion Rate:

       

  • P122   Evaluation of Pre-Treatment on Enzymatic Digestibility
    Total Sugars in Enzyme Hydrolysate, Glucose in Enzyme Hydrolysate, Xylose in Enzyme Hydrolysate, Arabinose in Enzyme Hydrolysate, Mannose in Enzyme Hydrolysate, Galactose in Enzyme Hydrolysate, Rhamnose in Enzyme Hydrolysate, Cellobiose in Enzyme Hydrolysate, Enzymatic Hydrolysis Kinetics, Cellulose Conversion Yield, Xylan Conversion Yield, Combined Sugar Yield, Cellulose Conversion Rate, Xylan Conversion Rate, Increase in Cellulose Accessibility after Pre-Treatment, Percent Increase in Cellulose Conversion Efficiency, Percent Increase in Cellulose Conversion Rate

    Further Details



    Fermentation Inhibitors in Enzymatic Hydrolysate


    It should be noted that an increase in digestibility does not always directly result in an increase in fermentability. Inhibitory sugar-degradation products including organic acids (e.g. acetic acid and formic acid), and furans (e.g. furfural and hydroxymethylfurfural) that may be formed during the pre-treatment process can be partially bound to the substrate and may be subsequently released into the enzymatic hydrolysate.

    Based on their concentrations, these inhibitory compounds can negatively affect the fermentation process. For example, furans can inhibit cell replications at higher concentrations whilst weak acids can inhibit fermentation by accumulation of intracellular anions or by uncoupling of cell metabolism. Knowledge of the types of inhibitors in the enzyme hydrolysate and their concentrations will help in developing pre-treatment processes to avoid or reduce inhibitor formation and also to select suitable detoxification processes prior to fermentation.

    We therefore recommend that the analysis of these potentially inhibitory compounds be undertaken when undertaking enzymatic hydrolysis tests, particularly those concerning the evaluation of the efficiency of biomass pre-treatment processes. Our analysis package P124 will determine the concentrations of these important inhibitors in the hydrolysate produced in our enzymatic hydrolysis tests.

    P124   Fermentation Inhibitors in Enzymatic Hydrolysate
    Formic Acid, Acetic Acid, Levulinic Acid, Furfural, Hydroxymethylfurfural

    Further Details



    Analysis of the Solid Residue after Enzymatic Hydrolysis


    In order to get the most detailed information about the efficacy of enzymatic digestion, we recommend that the solid residue is analysed for its lignocellulosic composition. The resulting data will show what amounts of the structural polysaccharides have not been hydrolysed and will also help to inform decisions regarding how this residue is valorised.

    P123   Composition of Residue from Enzymatic Hydrolysis
    Total Sugars, Glucose, Xylose, Mannose, Arabinose, Galactose, Rhamnose, Lignin (Klason), Lignin (Acid Soluble), Acid Insoluble Residue, Ash (Acid Insoluble)

    Further Details


    In many biorefineries the solid residue after enzymatic hydrolysis is combusted or processed in other thermal conversion technologies (e.g. gasification or pyrolysis) in order to provide process heat and energy. If you would like to evaluate the hdyrolysis residue for this end-use then we recommend that analysis package P40 is also undertaken.

    P40   Combustion Package
    Volatile Matter, Fixed Carbon, Moisture, Ash, Carbon, Hydrogen, Nitrogen, Sulphur, Oxygen, Gross Calorific Value, Net Calorific Value, Chlorine

    Further Details



    Cellulase Saccharification Efficiency


    At Celignis we also offer a range of analysis packages for evaluating enzymes and enzyme cocktails. In analysis package P125 we evaluate the efficiency of your enzymes for hydrolysing cellulose. The ability of cellulases to breakdown cellulose to its monomers is called saccharification efficiency and it can vary based on the activity of individual cellulase components. The efficiency is measured by determining the percentage of cellulose converted to glucose under standard/optimum conditions of the enzyme supplied.

    Our cellulose saccharification test can be undertaken using pure cellulose or complex lignocellulosic substrates taken either from Celignis's repository or, alternatively, you can supply these substrates yourself.

    P125   Cellulase Saccharification Efficiency
    Total Sugars in Enzyme Hydrolysate, Glucose in Enzyme Hydrolysate, Xylose in Enzyme Hydrolysate, Arabinose in Enzyme Hydrolysate, Mannose in Enzyme Hydrolysate, Galactose in Enzyme Hydrolysate, Rhamnose in Enzyme Hydrolysate, Cellobiose in Enzyme Hydrolysate, Enzymatic Hydrolysis Kinetics, Cellulose Conversion Yield, Cellulose Conversion Rate

    Further Details



    Xylanase Saccharification Efficiency


    The supplementation of xylanases with cellulases is an important strategy to improve the overall saccharification of lignocellulosic biomass. The ability of xylanase to hydrolyse the hemicellulose fraction of lignocellulose to xylose is called xylanase saccharification efficiency. It is measured by determining the percentage of xylan converted to xylose under standard/optimum conditions of the enzyme supplied. This test can be undertaken using pure xylan substrates or xylan-rich complex model substrates taken either from Celignis's repository or, alternatively, you can supply these substrates yourself.

    P126   Xylanase Saccharification Efficiency
    Total Sugars in Enzyme Hydrolysate, Glucose in Enzyme Hydrolysate, Xylose in Enzyme Hydrolysate, Arabinose in Enzyme Hydrolysate, Mannose in Enzyme Hydrolysate, Galactose in Enzyme Hydrolysate, Rhamnose in Enzyme Hydrolysate, Cellobiose in Enzyme Hydrolysate, Enzymatic Hydrolysis Kinetics, Xylan Conversion Yield, Xylan Conversion Rate

    Further Details



    Amylase Saccharification Efficiency


    The efficiency of amylases to break down the starch polymer to its constituent monomeric sugars is called amylase saccharification efficiency. The level of efficiency and the extent of hydrolysis will depend on the activity of the enzymes alpha-amylase and glucoamylase in the amylase enzyme mix. In analysis package P127 the rate of hydrolysis of starch to glucose and percentage of starch converted to glucose are analysed and given in terms of conversion rate and conversion efficiency respectively.

    P127   Amylase Saccharification Efficiency
    Total Sugars in Enzyme Hydrolysate, Glucose in Enzyme Hydrolysate, Maltose in Enzyme Hydrolysate, a-Amylase Hydrolysis Kinetics, Glucoamylase Hydrolysis Kinetics

    Further Details



    Cellulase activity


    We measure the activity of cellulase enzymes by filter paper assay (FPA) and express the activity in filter paper units (FPU/ml). The conversion of filter paper cellulose to glucose by cellulases is not a linear reaction. Hence, the assay requires enzyme dilutions to release fixed amount of glucose. Because the FPA is based on concentration of product released in a certain time in a nonlinear reaction, a conversion factor is used to approximate a specific activity-type unit.

    P128   Cellulase Activity
    Cellulase Activity

    Further Details



    Cellulolytic Enzymes Activity


    As described earlier, cellulases are a complex of endocellulases, exocellulases and beta-glucosidases. The total activity of cellulase depends on individual enzymes activities and their ability to act in synergy. In analysis package P129 we can determine the activities of these indivifual enzymes, an important test that will help in understanding the limiting components in the enzyme mix. The different tests undertaken in this analysis package are outlined below:

     
  • Endoglucanase Activity:

      Endo-b-1,4-D-glucanase (EC 3.2.1.4) randomly cleaves accessible intermolecular b-1,4-glucosidic bonds on the surface of cellulose. We employ the IUPAC-recommended endoglucanase (CMCase) assay which uses carboxymethyl cellulose (CMC) as a substrate and is a fixed conversion method based on 0.5 mg of glucose released under the reaction condition. It is expressed as CMC Units/ml or International Units (IU/ml).

  • beta-Glucosidase Activity:

      Beta-Glucosidase (BGL) acts on Beta-1,4-glucosidic bonds of cellobiose and cellodextrins with a degree of polymerisation (DP) ranging from 3 to 6. It also acts on chromogenic substrates such as para-nitrophenyl glucopyranoside (PNPG). BGL activity can be measured either by using cellobiose or PNPG as substrate. The PNPG assay considers the initial rate of reaction and the enzyme activity is calculated based on the linear range between absorbance and enzyme concentrations. The enzyme activity is expressed in International units (IU/ml).

  • Xylanase Activity:

      D-xylanases are either exo or endo enzymes. Solubilised xylan is used as the substrate for measuring the xylanase activity. Total reducing sugar released by the enzyme is measured and xylanase activity is expressed as international units per ml (IU/ml) which indicates the number of umoles of reducing sugar released per minute per ml of enzyme used.

  • P129   Cellulolytic Enzymes Activity
    Cellulase Activity, Endoglucanase Activity, b-Glucosidase Activity, Xylanase Activity

    Further Details



    Amylolytic Enzymes Activity


    With analysis package P130 we can determine the activity of amylolytic enzymes. This package involves the following tests:

     
  • a-Amylase Activity:

      Alpha-amylase is an endo-enzyme and acts randomly on the alpha-1,4 linkages of starch and releases a combination of disaccharides (maltose) and oligosaccharides. One unit of amylase releases 1 mg of maltose in the presence of starch under standard assay conditions. The activity of the enzyme is reported in International units (IU/ml).

  • Glucoamylase Activity:

      Gluco-amylase is both exo-enzyme and acts on both alpha-1,4 and alpha-1,6 linkages of starch. It releases glucose as the final product. One unit of glucoamylase releases 1 mg of glucose in the presence of starch under standard conditions.

  • P130   Amylolytic Enzymes Activity
    a-Amylase Activity, Glucoamylase Activity

    Further Details



    Summary of Analysis Packages for Enzymatic Hydrolysis and Enzyme Activities


    The analysis packages that we offer for enzymatic hydrolysis and enzyme activities, and the analytes that they determine, are listed below. Click on an entry for further details or go to the Celignis Database to place an order.





    P121   Evaluation of Biomass for Enzymatic Digestibility
    Total Sugars in Enzyme Hydrolysate, Glucose in Enzyme Hydrolysate, Xylose in Enzyme Hydrolysate, Arabinose in Enzyme Hydrolysate, Mannose in Enzyme Hydrolysate, Galactose in Enzyme Hydrolysate, Rhamnose in Enzyme Hydrolysate, Cellobiose in Enzyme Hydrolysate, Enzymatic Hydrolysis Kinetics, Cellulose Conversion Yield, Xylan Conversion Yield, Combined Sugar Yield, Cellulose Conversion Rate, Xylan Conversion Rate

    Further Details


    P122   Evaluation of Pre-Treatment on Enzymatic Digestibility
    Total Sugars in Enzyme Hydrolysate, Glucose in Enzyme Hydrolysate, Xylose in Enzyme Hydrolysate, Arabinose in Enzyme Hydrolysate, Mannose in Enzyme Hydrolysate, Galactose in Enzyme Hydrolysate, Rhamnose in Enzyme Hydrolysate, Cellobiose in Enzyme Hydrolysate, Enzymatic Hydrolysis Kinetics, Cellulose Conversion Yield, Xylan Conversion Yield, Combined Sugar Yield, Cellulose Conversion Rate, Xylan Conversion Rate, Increase in Cellulose Accessibility after Pre-Treatment, Percent Increase in Cellulose Conversion Efficiency, Percent Increase in Cellulose Conversion Rate

    Further Details


    P123   Composition of Residue from Enzymatic Hydrolysis
    Total Sugars, Glucose, Xylose, Mannose, Arabinose, Galactose, Rhamnose, Lignin (Klason), Lignin (Acid Soluble), Acid Insoluble Residue, Ash (Acid Insoluble)

    Further Details


    P124   Fermentation Inhibitors in Enzymatic Hydrolysate
    Formic Acid, Acetic Acid, Levulinic Acid, Furfural, Hydroxymethylfurfural

    Further Details


    P125   Cellulase Saccharification Efficiency
    Total Sugars in Enzyme Hydrolysate, Glucose in Enzyme Hydrolysate, Xylose in Enzyme Hydrolysate, Arabinose in Enzyme Hydrolysate, Mannose in Enzyme Hydrolysate, Galactose in Enzyme Hydrolysate, Rhamnose in Enzyme Hydrolysate, Cellobiose in Enzyme Hydrolysate, Enzymatic Hydrolysis Kinetics, Cellulose Conversion Yield, Cellulose Conversion Rate

    Further Details


    P126   Xylanase Saccharification Efficiency
    Total Sugars in Enzyme Hydrolysate, Glucose in Enzyme Hydrolysate, Xylose in Enzyme Hydrolysate, Arabinose in Enzyme Hydrolysate, Mannose in Enzyme Hydrolysate, Galactose in Enzyme Hydrolysate, Rhamnose in Enzyme Hydrolysate, Cellobiose in Enzyme Hydrolysate, Enzymatic Hydrolysis Kinetics, Xylan Conversion Yield, Xylan Conversion Rate

    Further Details


    P127   Amylase Saccharification Efficiency
    Total Sugars in Enzyme Hydrolysate, Glucose in Enzyme Hydrolysate, Maltose in Enzyme Hydrolysate, a-Amylase Hydrolysis Kinetics, Glucoamylase Hydrolysis Kinetics

    Further Details


    P128   Cellulase Activity
    Cellulase Activity

    Further Details


    P129   Cellulolytic Enzymes Activity
    Cellulase Activity, Endoglucanase Activity, b-Glucosidase Activity, Xylanase Activity

    Further Details


    P130   Amylolytic Enzymes Activity
    a-Amylase Activity, Glucoamylase Activity

    Further Details



    Examples of Cellulosic Biomass Suitable for Enzymatic Hydrolysis Tests








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